- Research article
- Open Access
- Open Peer Review
Meta-analysis of association between TCF7L2 polymorphism rs7903146 and type 2 diabetes mellitus
BMC Medical Genetics volume 19, Article number: 38 (2018)
Large scale association studies have found a significant association between type 2 diabetes mellitus (T2DM) and transcription factor 7-like 2 (TCF7L2) polymorphism rs7903146. However, the quality of data varies greatly, as the studies report inconsistent results in different populations. Hence, we perform this meta-analysis to give a more convincing result.
The articles, published from January 1st, 2000 to April 1st, 2017, were identified by searching in PubMed and Google Scholar. A total of 56628 participants (34232 cases and 22396 controls) were included in the meta-analysis. A total of 28 studies were divided into 4 subgroups: Caucasian (10 studies), East Asian (5 studies), South Asian (5 studies) and Others (8 studies). All the data analyses were analyzed by the R package meta.
The significant association was observed by using the dominant model (OR = 1.41, CI = 1.36 - 1.47, p < 0.0001), recessive model (OR = 1.58, CI = 1.48 - 1.69, p < 0.0001), additive model(CT vs CC) (OR = 1.34, CI = 1.28-1.39, p < 0.0001), additive model(TT vs CC) (OR = 1.81, CI = 1.69-1.94, p < 0.0001)and allele model (OR = 1.35, CI = 1.31-1.39, p < 0.0001).
The meta-analysis suggested that rs7903146 was significantly associated with T2DM in Caucasian, East Asian, South Asian and other ethnicities.
Diabetes is one of the largest global health emergencies in the twenty-first century. According to the International Diabetes Federation (IDF) , 46.5% of the adults with diabetes are undiagnosed, and 1 in 11 adults, about 415 million people, have diabetes. Every 6 s a person dies of diabetes (5.0 million deaths per year). By 2040, 1 in 10 adults, approximately 642 million people, will have diabetes. Notably, 12% of the global health expenditure, up to $673 billion, is dedicated to diabetes treatments, and the related take up most of the total expenditure.
The most prevalent form of diabetes is type 2 diabetes mellitus (T2DM), and in the developed countries up to 91% of the adults, who are being troubled by the diabetes, have T2DM. Excess body weight, physical inactivity, poor nutrition, genetics, family history of diabetes, past history of gestational diabetes and older age are risk factors that increase the rate of T2DM. Besides, T2DM is a complex disease, and and the function of the glycosylation plays a significant role [2, 3].
The SNP rs7903146(C/T) is a common variant in the gene TCF7L2, and allele T is the risk allele related to T2DM. The gene TCF7L2 is a transcription factor involved in the Wnt signaling pathway, and acts as a critical component of Wnt signalling and action [4–6]. The TCF7L2 gene product, a high mobility group box-containing transcription factor previously implicated in blood glucose homeostasis, is considered to act through the regulation of proglucagon gene expression in enteroendocrine cells via the Wnt signaling pathway . In human islets, TCF7L2 expression associates positively with insulin gene expression [8, 9].
To address the genetic variations of T2DM, many scholars devoted themselves to the related research [10–16]. The common Pro12Ala polymorphism rs1801282 in PPAR γ, the E23K variant rs5219 in KCNJ11, the polymorphism of the 5-HT2C receptor rs3813929 and the VKORC1 polymorphism rs9923231 were found to be associated with T2DM [17–20]. In 2006, Grant SF, et al.  confirmed a strongly significant association between susceptibility related to T2DM and common variants in transcription factor 7-like 2 (TCF7L2) in Icelandic subjects, and the result was the same with case-control method in Danish cohort and U.S. cohort. In 2006, Cauchi et al.  reported that the T-allele of the single nucleotide polymorphism (SNP) rs7903146 increased the risk of T2DM in the French population with 2367 cases and 2499 controls.The same results were shown by Horikoshi, Yu and Barra in case of the Japanese population, African American population and Brasilia [22–24]. However, Zheng et al.  found no association between rs7903146 and T2DM in the Chinese population.
The quality of the data varies greatly, is one of the reasons that the studies report inconsistent results, and the small sample size is another reason. The statistical efficiency can be improved after combining some samples together. The collected data in the control group was tested by the Hardy-Weinberg Equilibrium (HWE) in view of the quality of data. Therefore, we conducted a meta-analysis of published studies involving rs7903146 and T2DM to achieve a more comprehensive result. Finally, a total of 28 studies from 26 single studies [4, 22–46] were collected to reevaluate the association between rs7903146 and T2DM.
The articles, published from January 1st, 2000 to April 1st, 2017, were identified by searching the keywords “rs7903146” and “type 2 diabetes mellitus” in PubMed and Google Scholar. The selected articles were written in English.
Study selection criteria
We selected studies according to the following criteria: (1) The study was designed based on the case-control method. (2) The study evaluated the association between rs7903146 and T2DM. (3) The number of genotypes in case-controls groups was provided for calculating Odds Ratios (ORs). (4) The control group meets HWE. Besides, the p value of HWE was calculated by R program HWE version 1.2 . If p < 0.05, the article was preserved, otherwise the article was removed.
We extracted the following information from each study: (1) the first author of each article; (2) the publication year of each article; (3) the population of the study; (4) the ethnicity of individuals in each study; (5) the number of the rs7903146 genotypes both in cases and controls; (6) p value of HWE in the control group. We used R package meta to analyze the data. We also referred to some other methods [48–51] to conduct the meta-analysis.
Choice of genetic model
The rs7903146 has two alleles: C and T. We analyzed the association between rs7903146 and T2DM by using the dominant model (TT+CT versus CC), recessive model (TT versus CC+CT), additive model (CT versus CC), additive model(TT versus CC) and allele model (T versus C), respectively .
Odds Ratios and 95% confidence intervals (CIs) were calculated to assess the association between rs7903146 and T2DM. The two quantities, Cochran’s Q and I2, were adopted to evaluate the heterogeneity in different kinds of ethnic groups. Q approximately follows a chi square distribution with k-1 degrees of freedom (where k is the number of studies), and the p value can be used to measure the significance level of the heterogeneity. The value of I2, ranging from 0 to 100%, is calculated according to the formula, which is I 2 = (Q-(K-1))/Q*100%. The low, moderate, and high heterogeneity were labelled by I2 levels of 25%, 50% and 75%, respectively. If I2 is less than 50%, or p is more than 0.10, the fixed effect model is used, otherwise the random effect model is adopted.
Meta-analysis and subgroup analysis
After the heterogeneity test, we used the R package meta to perform the experiment with the fixed effect model .
Publication bias analysis and sensitivity analysis
A flow diagram for the study selection process was shown in Fig. 1. A total of 355 articles were identified by the search strategy, abd 28 studies from 26 articles were left. The detailed information about the search strategy was displayed in Additional file 1: Table S1.
As shown in Table 1, a total of 56628 participants (34232 cases and 22396 controls) of 28 studies from 26 articles were included in this meta-analysis. The studies were divided into Caucasian (10 studies) [4, 22, 29–36], East Asian (5 studies) [23, 25, 37–39], South Asian (5 studies) [42–46] and Others (Arab (2 studies) [26, 27], Black African (3 studies) [22, 28, 29] and Brazilian (3 studies) [24, 40, 41]) subgroups. The collected data, performed with the R package meta in this meta-analysis, was displayed in Additional file 1: Table S2.
According to the genotypes shown in Table1, a total of 28 studies were analyzed by the dominant model, recessive model, additive model and allele model, respectively. The heterogeneity of all subgroups was shown in Table 2. According to the data displayed in Table 2, we didn’t get the significant heterogeneity in the dominant model (p = 0.39 and I2 = 5.00%), recessive model (p = 0.33 and I2 = 9%), additive model (CT vs CC: p = 0.76 and I2 = 0.00%), additive model (TT vs CC: p = 0.15 and I2 = 22%) and allele model (p = 0.08 and I2 = 29%). As the p value was more than 0.1, we selected the fixed effect model.
Publication bias analysis and sensitivity analysis
The publication bias was not found in all models below. The p values of Begg’s test and Egger’s test for the dominant, recessive, additive (CT vs CC), additive (TT vs CC) and allele model are 0.7821 and 0.7352, 0.3635 and 0.441, 0.6354 and 0.711, 0.4528 and 0.5199, 0.6927 and 0.5673, respectively. The results were reflected in the funnel plots Fig. 2(a-e) directly.
Association between rs7903146 and type 2 diabetes mellitus
The association between rs7903146 and T2DM was shown in the forest plots: Figs. 3, 4, 5, 6 and 7 were the forest plots of the dominant model (TT+CT versus CC), recessive model (TT versus CC+CT), additive model (CT versus CC), allele model (T versus C) and additive model(TT versus CC), respectively. We made the Z test, and the result was displayed in the Table 3.
In Caucasian subgroup, the results were shown as follows: dominant model (TT + CT vs CC): (OR = 1.45, CI = 1.38 - 1.52, p < 0.0001); recessive model (TT vs CC + CT): (OR = 1.66, CI = 1.53 - 1.79, p < 0.0001); additive model (CT vs CC): (OR = 1.36, CI = 1.29 - 1.43, p < 0.0001); additive model(TT vs CC): (OR = 1.91, CI = 1.76 - 2.08), p < 0.0001); allele model (T vs C): (OR = 1.37, CI = 1.32 - 1.43, p < 0.0001).
In East Asian subgroup, the results were shown as follows: dominant model (TT + CT vs CC): (OR = 1.44, CI = 1.24 - 1.68, p < 0.0001); recessive model (TT vs CC + CT): (OR = 2.82, CI = 1.00 - 7.98, p = 0.0509); additive model (CT vs CC): (OR = 1.42, CI = 1.21 - 1.65, p<0.0001); additive model(TT vs CC): (OR = 1.81, CI = 1.69 - 1.94, p < 0.0001); additive model(TT vs CC): (OR = 2.90, CI = 1.03 - 8.22, p = 0.0446); allele model (T vs C): (OR = 1.37, CI = 1.32 - 1.43, p < 0.0001).
In South Asian subgroup, the results were shown as follows: dominant model (TT + CT vs CC): (OR = 1.41, CI = 1.31 - 1.64, p < 0.0001); recessive model (TT vs CC + CT): (OR = 1.52, CI = 1.26 - 1.83, p < 0.0001); additive model (CT vs CC): (OR = 1.42, CI = 1.29 - 1.43, p < 0.0001); additive model(TT vs CC): (OR = 1.81, CI = 1.69 - 1.94, p < 0.0001); additive model(TT vs CC): (OR = 1.77, CI = 1.46 - 2.15, p < 0.0001) allele model (T vs C): (OR = 1.44, CI = 1.24 - 1.67, p < 0.0001).
In Others subgroup, the results were shown as follows: dominant model (TT + CT vs CC): (OR = 1.24, CI = 1.12 - 1.36, p < 0.0001); recessive model (TT vs CC + CT): (OR = 1.35, CI = 1.15 - 1.58, p = 0.0002); additive model (CT vs CC): (OR = 1.4, CI = 1.24 - 1.58, p = 0.0019); additive model(TT vs CC): (OR = 1.48, CI = 1.26 - 1.75, p < 0.0001); allele model (T vs C): (OR = 1.37, CI = 1.25 - 1.49, p < 0.0001).
In total groups, the results were shown as follows: dominant model (TT + CT vs CC): (OR = 1.41, CI = 1.36 - 1.47, p < 0.0001); recessive model (TT vs CC + CT): (OR = 1.58, CI = 1.48 - 1.69, p < 0.0001); additive model (CT vs CC): (OR = 1.34, CI = 1.28 - 1.39, P < 0.0001); additive model(TT vs CC): (OR = 1.81, CI = 1.69 - 1.94, p < 0.0001); allele model (T vs C): (OR = 1.35, CI = 1.31 - 1.39, p < 0.0001).
In the meta-analysis, 56628 participants (34232 cases and 22396 controls) of 28 studies from 26 articles were included. The result of the four subgroups (Caucasian, East Asian, South Asian and Others) suggested that rs7903146 was significantly associated with T2DM in all subgroups and the total groups.
We removed each one of the studies in the groups or any subgroups in the dominant, recessive, additive and allele model for testing the robustness of results, respectively. The results did not change significantly, which displayed that the conclusion was robust. The heterogeneity and publication bias were not found in our meta-analysis.
We used the keywords “rs7903146”, “type 2 diabetes” and “meta-analysis” to search in PubMed, and got nine articles [46, 56–63]. Our work was different from others. We analyzed the association between rs7903146 and T2DM in Caucasian, East Asian, South Asian and Others groups. We did not find a significant heterogeneity in all subgroup analyses, so the fixed effect model was used. We found that rs7903146 was associated with T2DM in Caucasian, East Asian, South Asian and other ethnicities significantly.
Some limitations existed in this meta-analysis. Firstly, considering the heterogeneity in all subgroup analyses, we excluded 9 articles. More articles should be added into the meta-analysis. Secondly, some of the same cases or controls may be used in different studies.
The meta-analysis suggested that rs7903146 was significantly associated with T2DM in Caucasian, East Asian, South Asian and other ethnicities.
Single necluotide polymorphism
Type 2 diabetes mellitus
Transcription factor 7-like 2
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The authors gratefully thanked the editors and reviewers to help improve the manuscript.
This work was supported by China Natural Science Foundation (Grant No. 11301110), Natural Science Foundation of Heilongjiang Province of China (Grant No. QC2015076, No. A2015001 and No. LC2016024), China Postdoctoral Science Foundation (Grant No. 2015T80326 and No. 2013M541346), Heilongjiang Postdoctoral Fund (Grant No. LBH-TZ0504, No. LBH-Z13058 and No. LBH-Q13072), Open Project Program of Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education of Jilin University (Grant No. 93K172016K16), Open Project of State Key Laboratory of Urban Water Resource and Environment of Harbin Institute of Technology (Grant No. ES201602) and National High-Tech Research and Development Program (863) of China (No: 2015AA020101, 2015AA020108, 2014AA021505).
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Ding, W., Xu, L., Zhang, L. et al. Meta-analysis of association between TCF7L2 polymorphism rs7903146 and type 2 diabetes mellitus. BMC Med Genet 19, 38 (2018). https://0-doi-org.brum.beds.ac.uk/10.1186/s12881-018-0553-5