Table 1 Summary of SNP markers analysed
dbSNP ID | Chr. | Major allele | Minor allele | Minor allele frequency | Call rate | Method |
|---|---|---|---|---|---|---|
rs2284746 | 1 | C | G | 47.7% | 91.6% | OpenArray |
rs993925 | 1 | C | T | 34.9% | 97.6% | OpenArray |
rs12477314 | 2 | C | T | 20.2% | 97.7% | OpenArray |
rs2544527 | 2 | C | T | 35.9% | 97.8% | OpenArray |
rs1344555 | 3 | C | T | 21.3% | 98.0% | OpenArray |
rs1529672 | 3 | C | A | 17.8% | 98.5% | TaqMan |
rs9310995 | 3 | T | C | 43.6% | 98.2% | OpenArray |
rs1541374 | 4 | G | T | 34.6% | 94.1% | OpenArray |
rs10067603 | 5 | A | G | 24.3% | 96.2% | OpenArray |
rs1551943 | 5 | G | A | 23.6% | 97.3% | OpenArray |
rs153916 | 5 | T | C | 45.8% | 97.9% | OpenArray |
rs2798641 | 6 | C | T | 17.6% | 98.3% | OpenArray |
rs1928168 | 6 | C | T | 49.6% | 98.3% | OpenArray |
rs2855812a | 6 | G | T | 26.4% | 97.1% | OpenArray |
rs2857595a | 6 | G | A | 21.5% | 95.4% | OpenArray |
rs3094548 | 6 | C | G | 35.2% | 97.5% | OpenArray |
rs3734729 | 6 | A | G | 4.3% | 97.9% | OpenArray |
rs6903823 | 6 | A | G | 26.8% | 99.4% | TaqMan |
rs11001819 | 10 | A | G | 48.9% | 97.1% | OpenArray |
rs7068966b | 10 | T | C | 48.5% | 98.1% | OpenArray |
rs1878798b | 10 | G | C | 46.2% | 96.9% | OpenArray |
rs1036429 | 12 | C | T | 21.3% | 98.0% | OpenArray |
rs11172113 | 12 | T | C | 41.3% | 97.6% | OpenArray |
rs4762767 | 12 | G | A | 27.5% | 97.7% | OpenArray |
rs12914385c | 15 | C | T | 38.6% | 97.0% | OpenArray |
rs2036527c | 15 | G | A | 33.8% | 97.8% | OpenArray |
rs8040868c | 15 | T | C | 38.9% | 96.3% | OpenArray |
rs2865531 | 16 | A | T | 40.9% | 99.5% | TaqMan |
rs12447804d | 16 | C | T | 23.4% | 95.2% | OpenArray |
rs3743563d | 16 | C | T | 23.1% | 98.6% | OpenArray |
rs12716852 | 16 | A | G | 45.2% | 97.5% | OpenArray |
rs9978142 | 21 | A | T | 14.2% | 97.6% | OpenArray |