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Table 2 Mutations in BRCA2 gene in Slovenian population.

From: The occurrence of germline BRCA1 and BRCA2sequence alterations in Slovenian population

BIC nomenclature*

HGVS nomenclature**

Protein change according to BIC database

Described in BIC database (No. of quotations in BIC)

Present in other than Slovenian population (No. of families) ***

No. of positive Slovenian families

1003A > T****

c.775A > T

R259X

no

 

1

1756G > T

c.1528G > T

E510X

yes (1)

 

1

2041insA

c.1813dupA

615X

yes (97)

Germany (5), Czech rep (2)

1

3493C > T

c.3265C > T

Q1089X

yes (1)

 

1

4206 ins4 (TGCT) 4203_4206dupl

c.3978insTGCT c.3975_3978dupTGCT

1330X

yes

 

3

5164delGAAA

c.4936_4939delGAAA

1668X

yes

 

1

5519C > G

c.5291C > G

S1764X

no

 

4

5579insA

c.5351insA c.5351dupA

1786X

yes

Netherland (6)

1

5837TC > AG

c.5609_5610delTCinsAG

F1870X

yes (2)

 

1

6719delAGTT

c.6491_6494delAGTT

2166X

no

 

1

7531C > T

c.7303C > T

Q2435X

no

 

1

IVS16-2A > G 8064-2A > G

c.7806-2A > G

aberrant splicing

yes (5)

Germany (2 ), Italy (2)

11

9514C > T

c.9286C > T

E3096X

yes (1)

no

1

Total

    

28

  1. Description of nucleotide variations is in accordance with BIC nomenclature* (DNA variants are numerated according to NCBI reference sequence U43746 for mRNA of BRCA2; the first nucleotide of mRNA is numerated as 1) or HGVS nomenclature** (DNA variants are numerated according to NCBI reference NM_000059.3 for BRCA2; the first nucleotide of the start codon ATG is numerated as 1). ***References: Germany [15]. Italy [15]. Czech Rep [16, 45]. Netherland [17]. ****Albanian origin - Kosovo.