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Table 3 Reproducibility of markers located within 15 kb distance to the nearest transcription start sit

From: Genome wide screen identifies microsatellite markers associated with acute adverse effects following radiotherapy in cancer patients

Chr

Marker

Repeat Unit

Nearest gene

Distance to TS

2ndscreen FDR

Pvalues

      

1stscreen

2ndscreen

Overall

1

D1S0288i

GAA

IBRDC3

12196 bp

0.043

0.019

0.041

0.001

   

(IBR domain

     
   

containing 3)

     

5

D5S0365i

TG

C5orf13

6571 bp

9.28E-07

0.031

0.639

0.054

   

(Protein p311)

     

7

D7S0338i

GA

SEMA3A

1453 bp

0.041

0.012

2.70E-04

1.24E-05

   

(Semaphorin-3A)

     

12

D12S0456i

TG

IRAK3

2796 bp

0.038

0.018

0.194

0.008

   

(Interleukin-1 receptor-

     
   

associated kinase 3)

     
  1. Abbreviation: Chr = chromosome, TS = transcription start site, FDR = false discovery rate
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BMC Medical Genetics

ISSN: 1471-2350

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