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Table 5 Risk effects estimated by OR (95%CI) for the association between extended and reduced haplotypes across IL3 and CSF2 and risk of scarring trachoma and trichiasis.

From: Innate immunity in ocular Chlamydia trachomatis infection: contribution of IL8 and CSF2 gene variants to risk of trachomatous scarring in Gambians

HAP

SNPa

CLR

         

Scarring trachoma

Trichiasis

 

1A

2A

3A

4A

5A

6A

7A

8A

OR

95%CI

p value

OR

95%CI

p value

H1

T

C

C

G

T

C

G

C

1.370

1.070,1.763

0.010

1.390

1.040,1.869

0.030

H2

-

-

-

-

T

C

G

-

1.032

0.830,1.280

0.778

1.131

0.822,1.556

0.448

L1

T

C

C

G

A

T

A

C

0.804

0.520,1.220

0.324

0.871

0.520,1.378

0.609

L2

-

-

-

-

A

T

A

-

0.820

0.650,1.043

0.084

0.610

0.423,0.880

0.008

  1. a Refer to table 4 for SNP information
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BMC Medical Genetics

ISSN: 1471-2350

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