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Fig. 2 | BMC Medical Genetics

Fig. 2

From: Validation of genotype imputation in Southeast Asian populations and the effect of single nucleotide polymorphism annotation on imputation outcome

Fig. 2

Imputation accuracy and yield by chromosome. The results derived from 5% randomly removed SNPs. Imputation with IMPUTE2 was accomplished to recover the removed SNPs. The imputed SNPs were tested for accuracy with previously removed SNPs. The same set of the removed SNPs was applied to all population dataset. This process was repeated five times. a Imputation accuracy by chromosome using HMII as a reference. b Imputation accuracy by chromosome using 1000G as a reference. c Imputation yield by chromosome using HMII as a reference. d Imputation yield by chromosome using 1000G as a reference. Abbreviations: Indonesia (ID), Malaysia (MY), the Philippines (PI), Singapore (SG), and Thailand (TH)

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BMC Medical Genetics

ISSN: 1471-2350

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