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Table 5 All intronic variants (IVS) found in our group of patients

From: Molecular genetic analysis of PKHD1 by next-generation sequencing in Czech families with autosomal recessive polycystic kidney disease

Intron

cDNA level

rs number

Allele frequency % (n = 52)

7

c.527 + 19 T > C

rs17577001

32.7

7

c.527 + 51G > T

rs62406055

9.6

8

c.528-99delG

 

11.5

8

c.602 + 67A > G

rs3936986

38.5

12

c.779-30C > T

 

9.6

16

c.1234-10 T > A

rs4715272

17.3

19

c.1694-32C > G

 

5.8

20

c.1964 + 17G > T

rs201349527

1.9

23

c.2407 + 50C > T

rs10948667

38.5

31

c.3561-22A > G

 

1.9

32

c.3629-32A > G

rs2499480

44.2

32

c.5236 + 14A > G

rs12210725

5.8

49

c.7734-4 T > C

rs7452724

30.8

52

c.8302 + 12 T > A

rs1571084

48.1

52

c.8302 + 18A > G

rs12529717

1.9

53

c.8303-65C > A

 

71.2

53

c.8440 + 71A > G

rs80047024

5.8

54

c.8441-32G > C

rs3920621

46.2

56

c.8643-72C > T

rs9370049

36.5

57

c.8798-19A > C

rs1326605

75.0

61

c.11174 + 11A > G

rs115072237

3.8

67

c.11786-30C > T

rs9395699

15.4

  1. Newly described IVS are in bold. Both prediction programs (see Methods) determined the new IVS have no impact on splice site abruption and are therefore probably without disease-causing significance