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Table 2 Mean and standard deviation of pedigree-based relatedness coefficient and relatedness inference estimates for different estimators

From: Determining the genome-wide kinship coefficient seems unhelpful in distinguishing consanguineous couples with a high versus low risk for adverse reproductive outcome

 

Mean (standard deviation)

 

Case

Control

Pedigree

0.110 (0.058)

0.108 (0.049)

PLINK (all)

0.151 (0.064)

0.164 (0.054)

King robust (all)

0.039 (0.035)

0.050 (0.031)

PLINK (by population)

0.126 (0.063)

0.141 (0.051)

King homo. (by population)

0.054 (0.034)

0.062 (0.030)

IBDelphi

0.121 (0.059)

0.133 (0.053)

  1. all whole sample; by population separate estimates for Tunisian, Saudi and Turkish couples