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Table 2 Characteristics of the 11 single nucleotide polymorphisms and their genotype quality in the SAPHIR cohort

From: Genetic polymorphisms at SIRT1 and FOXO1 are associated with carotid atherosclerosis in the SAPHIR cohort

 

Alleles

SAPHIR (n = 1742)

SNP

Minor/Major*

MAF

Genotype counts**

HWE p***

Call rate

FOXO1

     

rs17446593

G/A

0.178

1186/513/55

1.000

0.991

rs2721068

C/T

0.260

958/666/121

0.755

0.986

rs17446614

A/G

0.155

1259/430/55

0.017

0.985

rs10507486

A/G

0.203

1135/529/91

0.006

0.992

rs2297627

G/A

0.304

867/710/180

0.055

0.993

SIRT1

     

rs3740051

G/A

0.063

1546/204/8

0.682

0.993

rs2236319

G/A

0.063

1543/207/7

1.000

0.993

rs12413112

A/G

0.120

1365/363/29

0.367

0.993

rs10823108

A/G

0.063

1546/203/9

0.414

0.993

rs2273773

C/T

0.063

1544/205/8

0.683

0.993

rs1467568

A/G

0.340

769/768/209

0.424

0.986

  1. *Minor and Major alleles based on the plus-strand.
  2. **Number of homozygotes for the major allele/heterozygotes/homozygotes for the rare allele.
  3. ***Based on exact test of HWE.