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Table 1 Genes with lower expression in mutant samples on microarray analysis. This table contains a list of genes with lower expression in mutant T-lymphocyte clones by one-way ANOVA analysis (p < 0.05). * indicates >1.5-fold change in expression level and ** indicates >2-fold change in expression level.

From: Expression profiling of clonal lymphocyte cell cultures from Rett syndrome patients

No.

Gene Name

P-value

Common name

Genbank No.

Description

1**

201160_s_at

0.000593

CSDA

AL556190

cold shock domain protein A

2*

201417_at

0.00108

SOX4

AL136179

SRY (sex determining region-Y) box 4

3

202565_s_at

0.00385

SVIL

NM_003174

supervillin

4

204860_s_at

0.00453

BIRC1

AI817801

Transcribed seq with strong similarity BIR1

5

215333_x_at

0.00459

GSTM1

X08020

glutathione S-transferase M1

6*

210763_x_at

0.00546

NCR3

AF031137

natural cytotoxicity triggering receptor 3

7**

217979_at

0.00821

TM4SF13

NM_014399

transmembrane 4 superfamily member 13

8

208524_at

0.0117

GPR15

NM_005290

G protein-coupled receptor 15

9**

215440_s_at

0.012

BEXL1

AL523320

hypothetical protein FLJ10097

10

213193_x_at

0.0157

TRBC1

AL559122

T cell receptor beta chain BV20S1 BJ1-5 BC1 mRNA

11

220131_at

0.0174

FXYD7

NM_022006

FXYD domain containing ion transport regulator 7

12

204550_x_at

0.0175

GSTM1

NM_000561

glutathione S-transferase M1

13

212739_s_at

0.0186

NME4

AL523860

non-metastatic cells 4, protein expressed in

14*

220684_at

0.0187

TBX21

NM_013351

T-box 21

15

203030_s_at

0.0195

PTPRN2

AF007555

protein tyrosine phosphatase, receptor type N polypeptide 2

16

219693_at

0.0232

AGPAT4

NM_020133

1-acylglycerol-3-phosphate O-acyltransferase 4

17*

219654_at

0.0245

PTPLA

NM_014241

protein tyrosine phosphatase-like, member a

18

217764_s_at

0.0245

RAB31

AF183421

RAB31, member RAS oncogene family

19*

217671_at

0.0247

RFX3

BE466926

regulatory factor X, 3 (Influences HLA class II expression)

20**

204232_at

0.025

FCER1G

NM_004106

Fc fragment of IgE, high affinity receptor for γ-polypeptide

21*

1405_i_at

0.0298

CCL5

M21121

chemokine (C-C motif) ligand 5

22**

206170_at

0.0308

ADRB2

NM_000024

adrenergic, beta-2-, receptor, surface

23**

211583_x_at

0.0317

NCR3

AF031136

natural cytotoxicity triggering receptor 3

24

202279_at

0.0328

C14orf2

NM_004894

chromosome 14 open reading frame 2

25

214012_at

0.0333

ARTS-1

BE551138

type 1 TNF receptor shedding aminopeptidase regulator

26

204396_s_at

0.0346

GRK5

NM_005308

G protein-coupled receptor kinase 5

27**

211010_s_at

0.0349

NCR3

AF031138

natural cytotoxicity triggering receptor 3

28

208791_at

0.0351

CLU

M25915

clusterin

29**

219529_at

0.0383

CLIC3

NM_004669

chloride intracellular channel 3

30

217104_at

0.0385

LOC283687

AL109714

hypothetical protein LOC283687

31

213280_at

0.0397

GARNL4

AK000478

GTPase activating RANGAP domain-like 4

32

202234_s_at

0.04

SLC16A1

BF511091

solute carrier family 16, member 1

33**

215006_at

0.0404

 

AK023816

CDNA FLJ13754 fis, clone PLACE3000362

34

204883_s_at

0.0409

HUS1

AI968626

HUS1 checkpoint homolog (S. pombe)

35**

217963_s_at

0.0409

NGFRAP1

NM_014380

nerve growth factor receptor (TNFRSF16) ass. protein 1

36**

212070_at

0.0419

GPR56

AL554008

G protein-coupled receptor 56

37**

202363_at

0.042

SPOCK1

AF231124

sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican)

38*

206974_at

0.0427

CXCR6

NM_006564

chemokine (C-X-C motif) receptor 6

39

200965_s_at

0.0433

ABLIM1

NM_006720

actin binding LIM protein 1

40

219457_s_at

0.045

RIN3

NM_024832

Ras and Rab interactor 3

41**

213915_at

0.0452

NKG7

NM_005601

natural killer cell group 7 sequence

42

215411_s_at

0.0463

C6orf4

AL008730

 

43*

212274_at

0.0484

LPIN1

AV705559

AV705559ADB Homo sapiens cDNA clone ADBAPE04 5'

44

219155_at

0.049

PITPNC1

NM_012417

phosphatidylinositol transfer protein, cytoplasmic 1