Published SNP | Set 1 families | Cases and controls | ||||||||
---|---|---|---|---|---|---|---|---|---|---|
 | MAF | N parent-child trios (T/NT) | PTDT | Allelic RR [95% CI] | Genotype RR [95% CI] | MAF | N cases/controls | P1df | Allelic OR [95%CI] | Genotype OR [95%CI] |
ST+4 rs44707 | 0.39 | 703 (421/443) | 0.02* | 0.95 [0.83–1.09] | C/C 1.00 [ref] A/C 0.80 [0.67–0.96] A/A 0.99 [0.76–1.30] | n/a | n/a | n/a | n/a | n/a |
**V4 rs2787094 | 0.23 | 653 (350/451) | 0.0004 | 0.78 [0.67–0.89] | G/G 1.00 [ref] G/C 0.78 [0.67–0.92] C/C 0.59 [0.41–0.85] | 0.22 | 4326/4610 | 0.57 | 1.02 [0.95–1.10] | G/G 1.00 [ref] G/C 1.04 [0.95–1.14] C/C 0.99 [0.81–1.22] |
Q-1 rs612709 | 0.14 | 402 (219/247) | 0.02* | 0.89 [0.74–1.06] | G/G 1.00 [ref] G/A 0.99 [0.81–1.21] A/A 0.42 [0.22–0.83] | n/a | n/a | n/a | n/a | n/a |
ST+7 rs574174 | 0.20 | 669 (392/393) | 0.97 | 1.00 [0.87–1.15] | T/T 1.00 [ref] T/C 1.02 [0.87–1.20] C/C 0.92 [0.63–1.34] | n/a | n/a | n/a | n/a | n/a |
T+1 rs2280089 | 0.13 | 512 (274/304) | 0.21 | 0.90 [0.77–1.06] | G/G 1.00 [ref] C/G 0.90 [0.75–1.07] C/C 0.83 [0.49–1.43] | n/a | n/a | n/a | n/a | n/a |
T2 rs2280090 | 0.13 | 520 (277/314) | 0.13 | 0.88 [0.75–1.04] | T/T 1.00 [ref] T/C 0.88 [0.73–1.05] C/C 0.81 [0.47–1.39] | n/a | n/a | n/a | n/a | n/a |