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Table 1 Eight SNPs analyzed for association with migraine in a Swedish population-based cohort

From: A replication study of GWAS findings in migraine identifies association in a Swedish case–control sample

Chr

SNP of interest

Alleles

Replacement SNP

Gene

Alleles

Risk Allele

MAF

OR

1

rs2651899

T > C

 

PRMD16

 

C

0.45

1.10

1

rs3790455

 

rs2274316

MEF2D

A > C

C

0.34

1.23

2

rs10166942

 

rs1003540

TRMP8

A > G

A

Na

Na

3

rs7640543

 

rs4075749

TGFBR2

T > C

C

Na

Na

6

rs9349379

A > G

 

PHACTR1

 

A

0.38

0.82

8

rs1835740

C > T

 

MTDH

 

T

0.22

1.0

9

rs6478241

G > A

 

ASTN2

 

A

0.38

1.22

12

rs11172113

T > C

 

LRP1

 

T

0.4

0.86

  1. Chr = chromosome; SNP of interest = SNPs identified in previous GWAS, see article text for references; Replacement SNP = SNPs of interest not genotyped on the Illumina chip were replaced with other genotyped SNPs in linkage disequilibrium with the SNP of interest (r 2 > 0.89); Gene = the SNPs are either located within or close to these genes; MAF = minor allele frequency from Freilinger et al. [14]; OR = odds ratio from Freilinger et al. [14].