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Table 4 Minor allele frequencies in different populations as compared to the Indian control individuals

From: Potential contribution of SIM2 and ETS2 functional polymorphisms in Down syndrome associated malignancies

SNP ID

IND MAF

CEU MAF

Chi Sq, p

HCB MAF

Chi Sq, p

JPT MAF

Chi Sq, p

YRI MAF

Chi Sq, p

rs2269188

0.348

0.305

0.570, 0.450

0.567

9.74, 0.002

0.534

6.57, 0.010

0.092

19.7, 0.000

rs374575

0.066

0.29

16.4, 0.000

0.14

2.61, 0.106

0.041

0.866, 0.352

0.005

4.69, 0.030

rs2070529

0.407

0.168

14.0, 0.000

0.523

2.43, 0.119

0.61

8.000, 0.005

0.27

4.37, 0.037

rs2070530

0.417

0.168

15.0, 0.000

0.523

2.01, 0.157

0.61

8.000, 0.005

0.29

3.69, 0.055

rs2070531

0.293

0.398

2.20, 0.138

0.221

1.29, 0.256

0.227

0.936, 0.333

0.288

0.00, 1.000

rs6517481

0.293

0.361

0.814. 0.367

0.318 (HCB + JPT)

0.212, 0.645

0.3

0.240E-01, 0.877

rs7276961

0.293

0.347

0.570, 0.450

0.466 (HCB + JPT)

6.88, 0.009

0.3

0.240E-01, 0.877

rs1051475

0.276

0.347

1.14, 0.287

0.227 (HCB + JPT)

0.658, 0.417

0.2

1.75, 0.185

rs1051476

0.276

0.42

4.31, 0.038

0.239

0.416, 0.519

0.209

1.32, 0.25

0.246

0.231, 0.631

rs11254

0.28

0.432

4.91, 0.027

0.233

0.658, 0.417

0.2

1.75, 0.185

0.25

0.231, 0.631

rs711

0.26

0.425

6.39, 0.011

0.2 (HCB + JPT)

1.02, 0.313

0.441

7.12, 0.008

  1. MAF: Minor Allele Frequency; CEU: Caucasian population; HCB: Chinese from Beijing, China; JPT: Japanese from Tokyo, Japan; YRI: Yoruba from Ibadan, Nigeria.