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Table 3 Target genes of SIM2/ETS2 and their probable function identified by in silico analysis

From: Potential contribution of SIM2 and ETS2 functional polymorphisms in Down syndrome associated malignancies

Gene IDs

Location

Function (Obtained using Panther Pathway tool)

A4GALT

22q13.2

Carbohydrate metabolic process, lipid metabolic process, protein metabolic process

ABCB8

7q36.1

Immune system process, extracellular transport, carbohydrate metabolic process, response to toxin

ABP1

7q36.1

Oxidoreductase activity, immune system process, cellular amino acid and derivative metabolic process

ATP1A1

1p13.1

Hydrolase activity, cation transmembrane transporter activity, ion channel activity, cation transport, lipid transport, lipid metabolic process, cellular calcium ion homeostasis

ATP1A4

1q23.2

Cation transport, lipid transport, lipid metabolic process, homeostasis

C1QL1

17q21.31

Complement activation, carbohydrate transport, signal transduction, cell-cell signaling, cell adhesion, carbohydrate metabolic process, lipid metabolic process, cellular component morphogenesis, mesoderm development, skeletal system development, response to stimulus

C4BPA

1q32.2

Complement activation, signal transduction, cell-cell adhesion, protein metabolic process, blood coagulation

C4BPB

1q32.2

Complement activation, signal transduction, cell-cell adhesion, protein metabolic process, blood coagulation

CEACAM1

19q13.2

Signal transduction, cell-cell adhesion

CYB561

17q23.3

Oxidoreductase activity, respiratory electron transport chain

EMCN

4q24

Cell adhesion

EXOSC2

9q34.12

Nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

FVT1

18q21.3

Oxidoreductase activity, metabolic process

FXYD5

19q13.12

Ion channel activity, protein binding ion transport, signal transduction

GATA3

10p14

Hydrolase activity, acting on ester bonds, DNA binding, transcription factor activity nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, endoderm development, heart development, hemopoiesis

GNB2L1

5q35.3

Intracellular protein transport, signal transduction

GTF3C5

9q34.2

DNA binding, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

H1F0

22q13.1

Nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, organelle organization, establishment or maintenance of chromatin architecture

HLA-DOA

6p21.32

Antigen processing and presentation of peptide or polysaccharide antigen via MHC class II, cellular defense response

HPD

12q24.31

Cellular amino acid and derivative metabolic process

HRB2

12q21.2

RNA binding, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

KDELR2

7p22.1

Intracellular protein transport, exocytosis

KLK8

19q13.41

Spermatogenesis, immune system process, cell cycle, protein metabolic process, cell cycle, ectoderm development, nervous system development, blood coagulation

KRT16

17q21.2

Structural constituent of cytoskeleton, ectoderm development, cellular component morphogenesis

LCK

1p35.1

Female gamete generation, immune system process, carbohydrate transport, apoptosis, cell cycle, cell surface receptor linked signal transduction, intracellular signaling cascade, carbohydrate metabolic process, protein metabolic process, cell motion, signal transduction, cell-cell signaling, cell-cell adhesion, ectoderm development, mesoderm development, embryonic development, angiogenesis, nervous system development, response to stress

LDLR

19p13.2

female gamete generation, cell adhesion

LPPR4

1p21.2

Cell surface receptor linked signal transduction, phosphate metabolic process, lipid metabolic process, signal transduction

MAG

19q13.12

Receptor activity, structural constituent of myelin sheath, receptor binding, B cell mediated immunity, cell surface receptor linked signal transduction, cell-cell adhesion, signal transduction, cell-cell adhesion, ectoderm development, nervous system development, response to stimulus

MAGEA3

Xq28

Gamete generation, induction of apoptosis, cell adhesion

MAGEE1

Xq13.3

Gamete generation, induction of apoptosis, cell adhesion

MASP1

3q27.3

Complement activation, protein metabolic process, response to stimulus

MLX

17q21.2

DNA binding, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, transcription factor activity

MOGAT1

2q36.1

Acyl-CoA metabolic process, lipid metabolic process

MRPL37

1p32.3

Protein metabolic process

MRPS12

19q13.2

Protein metabolic process

NAT5

20p11.23

Acyltransferase activity, protein metabolic process

NDUFA2

5q31.3

Oxidoreductase activity, oxidative phosphorylation, respiratory electron transport chain

PCSK4

19p13.3

Peptidase activity, cell surface receptor linked signal transduction, cell-matrix adhesion, protein metabolic process, signal transduction

PDE6D

2q37.1

Visual perception, sensory perception, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

PRSS8

16p11.2

Peptidase activity, spermatogenesis, immune system process, protein metabolic process

RELA

11q13.1

B cell mediated immunity, negative regulation of apoptosis, cell cycle, intracellular signaling cascade, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, signal transduction, cellular defense response

RER1

1p36.32

Intracellular protein transport

S100A8

1q21.3

Calcium ion binding, receptor binding, calmodulin binding, immune response, macrophage activation, cell cycle, intracellular signaling cascade, cell motion, cell cycle, signal transduction, response to stimulus

S100A9

1q21.3

Immune response, macrophage activation, cell cycle, intracellular signaling cascade, cell motion, cell cycle, signal transduction, response to stimulus

SCARB1

12q24.31

Receptor activity, macrophage activation, lipid transport, apoptosis, signal transduction, cell adhesion, lipid metabolic process, cellular component morphogenesis

SERPINA1

14q32.13

Protein metabolic process

SFRS1

17q22

RNA splicing factor activity, transesterification mechanism, RNA binding, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

SLC25A21

14q13.3

Cation transport, phosphate transport, lipid transport, nucleobase, nucleoside, nucleotide and nucleic acid transport, phosphate metabolic process, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, lipid metabolic process

SLC7A9

19q13.11

Amino acid transmembrane transporter activity, transmembrane transporter activity amino acid transport, cellular amino acid and derivative metabolic process

SP1

12q13.13

Immune system process, nucleoside, nucleotide and nucleic acid metabolic process

TGM2

20q11.23

Protein metabolic process

TH

11p15.5

Oxidoreductase activity, signal transduction, cellular amino acid and derivative metabolic process

THBS1

15q14

Receptor binding, enzyme regulator activity, immune system process, blood coagulation

TRFP

6p21.1

Ubiquitin-protein ligase activity

TRRAP

7q22.1

Immune system process, induction of apoptosis, cell cycle, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, protein metabolic process, cell cycle, signal transduction, organelle organization, establishment or maintenance of chromatin architecture, response to stress