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Table 1 Obesity SNPs for association with BMI in the Auckland Birthweight Collaborative study samples (Morgan et al.[12])

From: Reduced genetic influence on childhood obesity in small for gestational age children

Gene

Name

Chr

SNP

Description

Tested allele

Tested allele frequency

ADIPOR2

adiponectin receptor 2

12

rs2286385

Intronic

T

0.339

BDNF

Brain-derived neurotrophic factor

11

rs6265

Missense V66M

G

0.828

BDNF

Brain-derived neurotrophic factor

11

rs925946

9.2 kb upstream

G

0.653

CTNNBL1

catenin (cadherin-associated protein), beta-like 1

20

rs16986921

Intronic

T

0.046

CTNNBL1

catenin (cadherin-associated protein), beta-like 1

20

rs6013029

Intronic

T

0.045

CTNNBL1

catenin (cadherin-associated protein), beta-like 1

20

rs6020395

Intronic

C

0.049

CTNNBL1

catenin (cadherin-associated protein), beta-like 1

20

rs6020712

Intronic

A

0.046

CTNNBL1

catenin (cadherin-associated protein), beta-like 1

20

rs6020846

Intronic

G

0.054

CTNNBL1

catenin (cadherin-associated protein), beta-like 1

20

rs6096781

Intronic

C

0.040

CTNNBL1

catenin (cadherin-associated protein), beta-like 1

20

rs6125962

Intronic

C

0.053

FAIM2

Fas apoptotic inhibitory molecule 2

12

rs7138803

Intergenic

A

0.373

FTO

fat mass and obesity associated gene

16

rs6499640

Intronic

A

0.613

FTO

fat mass and obesity associated gene

16

rs8050136

Intronic

A

0.358

FTO

fat mass and obesity associated gene

16

rs9939609

Intronic

A

0.346

GNPDA2

glucosamine-6-phosphate deaminase 2

4

rs10938397

453.9 kb downstream

G

0.462

HMGA2

high mobility group AT-hook 2

12

rs1042725

UTR-3

C

0.502

INSIG2

insulin-induced gene 2 gene

2

rs2012693

25.8 kb upstream

C

0.607

INSIG2

insulin-induced gene 2 gene

2

rs7566605

10 kb upstream

G

0.678

KCTD15

potassium channel tetramerization domain containing 15

19

rs11084753

17 kb downstream

A

0.347

LPL

lipoprotein lipase

8

rs3200218

3′UTR

G

0.238

MAF

v-maf musculoaponeurotic fibrosarcoma oncogene homolog

16

rs1424233

48 kb downstream

A

0.479

MC4R

melanocortin-4 receptor

18

rs12970134

153.8 kb upstream

A

0.259

MC4R

melanocortin-4 receptor

18

rs17700633

109.1 kb upstream

A

0.309

MC4R

melanocortin-4 receptor

18

rs17782313

187.5 kb upstream

C

0.228

MC4R

melanocortin-4 receptor

18

rs4450508

125.1 kb upstream

A

0.325

MC4R

melanocortin-4 receptor

18

rs502933

142 kb upstream

A

0.317

MTCH2

mitochondrial carrier homolog 2

11

rs10838738

Intronic

G

0.363

MTMR9

myotubularin-related protein 9

8

rs2293855

intronic

A

0.393

NPC1

Niemann-Pick disease, type C1

16

rs1805081

Missense H 215R

A

0.558

NEGR1

Neuronal growth regulator 1

1

rs2568958

16.7 kb downstream

A

0.609

NEGR1

Neuronal growth regulator 1

1

rs2815752

64 kb downstream

T

0.608

PFKP

platelet type phosphofructokinase

10

rs2388395

317 kb upstream

G

0.988

PFKP

platelet type phosphofructokinase

10

rs6602024

Intronic

A

0.106

PTER

phosphotriesterase-related gene

10

rs10508503

179 kb upstream

C

0.917

SEC16B

SEC16 homolog B

1

rs10913469

Intronic

C

0.172

SH2B1

SH2B adaptor protein 1

16

rs7498665

Missense A434T

G

0.614

TMEM18

transmembrane protein 18

2

rs6548238

33 kb upstream

C

0.833