Gene | dbSNP id | Alleles (major/minor) | MAF mothers N = 6844* | MAF children N = 7685* | CEU†| Risk allele‡ | Reported associations |
---|---|---|---|---|---|---|---|
ADAMTS9 | rs4607103 | C/T | 0.24 | 0.24 | 0.19 | major | T2D |
ADCY5 | rs2877716 | C/T | 0.26 | 0.26 | 0.25 | major | fasting glucose/T2D |
ADIPOQ | rs1501299 | G/T | n/t | 0.27 | 0.27 | minor | T2D |
ADIPOQ | rs17300539 | G/A | n/t | 0.09 | 0.08 | minor | T2D |
ADIPOQ | rs266729 | C/G | n/t | 0.26 | 0.31 | minor | T2D |
ADRA2A | rs10885122 | G/T | 0.13 | 0.12 | 0.10 | major | fasting glucose |
C2CD4B | rs11071657 | A/G | 0.39 | 0.38 | 0.41 | major | fasting glucose |
CDC123/CAMK1D | rs12779790 | A/G | 0.18 | 0.19 | 0.22 | minor | T2D |
CDKAL1 | rs10946398 | A/C | 0.31 | 0.31 | 0.30 | minor | T2D |
CDKN2A/B | rs10811661 | T/C | 0.18 | 0.17 | 0.20 | major | T2D |
COX2 | rs20417 | G/C | 0.15 | 0.15 | 0.18 | major | T2D |
CRY2 | rs11605924 | C/A | 0.48 | 0.48 | 0.54 | minor | fasting glucose |
DGKB/TMEM195 | rs2191349 | T/G | 0.46 | 0.46 | 0.53 | major | fasting glucose/T2D |
FADS1 | rs174550 | T/C | 0.33 | 0.33 | 0.37 | major | fasting glucose |
FTO | rs9939609 | T/A | 0.40 | 0.40 | 0.45 | minor | obesity |
G6PC2 | rs560887 | C/T | 0.30 | 0.30 | 0.33 | major | fasting glucose |
GCK | rs1799884 | G/A | 0.18 | 0.18 | 0.20 | minor | fasting glucose/T2D |
GCKR | rs780094 | C/T | 0.39 | 0.39 | 0.38 | major | fasting glucose/T2D |
GLIS3 | rs7034200 | C/A | 0.47 | 0.48 | 0.53 | minor | fasting glucose |
HHEX-IDE | rs1111875 | C/T | 0.41 | 0.41 | 0.44 | major | T2D |
HNF1B | rs757210 | C/T | 0.37 | 0.37 | 0.43 | minor | T2D |
IGF2BP2 | rs4402690 | G/T | 0.31 | 0.30 | 0.29 | minor | T2D |
JAZF1 | rs864745 | A/G | 0.50 | 0.50 | 0.48 | major | T2D |
KCNJ11 | rs5219 | C/T | 0.35 | 0.35 | 0.50 | minor | T2D |
KCNQ1 | rs2237892 | C/T | 0.06 | 0.06 | 0.08 | major | T2D |
KCNQ1 | rs2237895 | A/C | 0.42 | 0.41 | 0.36 | minor | T2D |
MADD | rs7944584 | A/T | 0.28 | 0.28 | 0.29 | major | fasting glucose |
MTNR1B | rs10830963 | C/G | 0.27 | 0.28 | 0.30 | minor | fasting glucose/T2D |
NOTCH2 | rs10923931 | G/T | 0.11 | 0.11 | 0.09 | minor | T2D |
PPARG | rs1801282 | C/G | 0.12 | 0.11 | 0.07 | major | T2D |
PROX1 | rs340874 | C/T | 0.43 | 0.43 | 0.44 | major | fasting glucose/T2D |
SLC2A2 | rs11920090 | T/A | 0.12 | 0.13 | 0.13 | major | fasting glucose |
SLC30A8 | rs13266634 | C/T | 0.30 | 0.30 | 0.25 | major | fasting glucose/T2D |
TCF7L2 | rs12255372 | G/T | 0.29 | 0.29 | 0.22 | minor | fasting glucose |
TCF7L2 | rs7903146 | C/T | 0.30 | 0.30 | 0.25 | minor | fasting glucose/T2D |
THADA | rs7578597 | A/G | 0.11 | 0.11 | 0.08 | major | T2D |
TSPAN8/LGR5 | rs7961581 | T/C | 0.28 | 0.28 | 0.23 | minor | T2D |
WFS1 | rs10010131 | G/A | 0.40 | 0.40 | 0.26 | major | T2D |