From: A genome wide association study of pulmonary tuberculosis susceptibility in Indonesians
SNP | Chr. | Gene | Â | Risk allele | Stage 1 Indo. P* | OR | (95% CI) | Stage 2 Indo. P* | OR | (95% CI) | Indo. allele freq. | Stage 3 Russ. P* | OR | (95% CI) | Russ allele freq. | Indo. & Russ. P | OR | (95% CI) | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
rs2273061 | 20 | JAG1 | Â | G | 0.004 | 1.80 | 1.18 | 2.72 | 0.01 | 1.24 | 1.05 | 1.46 | 0.28 | 0.008 | 1.14 | 1.03 | 1.25 | 0.43 | 0.0004 | 1.16 | 1.07 | 1.26 |
rs4461087 | 16 | DYNLR | Â | A | 0.009 | 1.62 | 1.10 | 2.37 | 0.03 | 1.18 | 1.01 | 1.38 | 0.38 | 0.01 | 1.18 | 1.04 | 1.34 | 0.16 | 0.001 | 1.18 | 1.07 | 1.30 |
rs10515787 | 5 | EBF1 | Â | A | 0.006 | 0.57 | 0.38 | 0.88 | 0.02 | 0.81 | 0.68 | 0.96 | 0.26 | 0.02 | 0.73 | 0.56 | 0.96 | 0.03 | 0.001 | 0.79 | 0.68 | 0.91 |
rs10497744 | 2 | TMEFF2 | Both SNPs in LD r2 = 0.99 D' = 1.00 | A | 0.002 | 0.55 | 0.38 | 0.82 | 0.02 | 0.83 | 0.71 | 0.97 | 0.35 | 0.02 | 0.89 | 0.80 | 0.98 | 0.30 | 0.001 | 0.87 | 0.80 | 0.95 |
rs1020941 | 2 | TMEFF2 | Â | C | 0.004 | 0.57 | 0.38 | 0.83 | 0.03 | 0.84 | 0.72 | 0.98 | 0.35 | 0.03 | 0.89 | 0.81 | 0.99 | 0.30 | 0.002 | 0.88 | 0.81 | 0.95 |
rs188872 | 16 | CCL17 | Â | A | 0.004 | 0.51 | 0.33 | 0.78 | 0.02 | 0.82 | 0.70 | 0.97 | 0.30 | 0.04 | 0.89 | 0.80 | 0.99 | 0.25 | 0.002 | 0.87 | 0.80 | 0.95 |
rs10245298 | 7 | HAUS6 | Â | A | 0.03 | 2.37 | 1.09 | 5.16 | 0.03 | 1.40 | 1.04 | 1.89 | 0.07 | 0.04 | 1.18 | 1.01 | 1.39 | 0.09 | 0.005 | 1.23 | 1.06 | 1.41 |
rs6985962 | 8 | PENK | Â | C | 0.02 | 2.01 | 1.12 | 3.61 | 0.04 | 1.26 | 1.01 | 1.59 | 0.13 | 0.047 | 1.14 | 1.00 | 1.29 | 0.15 | 0.006 | 1.17 | 1.05 | 1.31 |
rs1418267 | 9 | TXNDC4 | Â | A | 0.0004 | 3.19 | 1.71 | 5.99 | 0.04 | 1.28 | 1.01 | 1.62 | 0.12 | 0.04 | 1.11 | 1.01 | 1.22 | 0.40 | 0.007 | 1.13 | 1.03 | 1.23 |