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Association of CACNG6 polymorphisms with aspirin-intolerance asthmatics in a Korean population
BMC Medical Genetics volume 11, Article number: 138 (2010)
Aspirin-intolerant asthma (AIA) occurs in the lower and upper airways through excessive production of leukotrienes upon administration of non-steroidal anti-inflammatory drugs (NSAIDs). One of the three symptoms of AIA is nasal polyposis, a chronic inflammatory disease that is related to the function of calcium ion in recruitment of immune cells during airway inflammation. It has been implicated that bronchodilation in the airway is related to Ca(2+) regulation. The calcium channel, voltage-dependent, gamma subunit 6 (CACNG6) gene encodes a protein that stabilizes the calcium channel.
To study the associations between AIA and polymorphisms in CACNG6 gene, eight variants were genotyped in 102 AIA cases and 429 aspirin-tolerant asthma (ATA) controls. Logistic analyses were used to evaluate the associations of CACNG6 polymorphisms with AIA.
Statistical analyses revealed that a single nucleotide polymorphism (SNP; rs192808C > T; P = 0.0004, P corr = 0.0029, OR = 2.88 in co-dominant model; P = 0.0005, P corr = 0.0036, OR = 2.99 in dominant model) in intron and a haplotype unique to this variant (CACNG6_BL1_ht6; P = 0.003, P corr = 0.02, OR = 2.57 in co-dominant model, P = 0.001, P corr = 0.0087, OR = 2.81 in dominant model) were significantly associated with the risk of AIA.
Our results suggest that the CACNG6 variants might be associated with the risk of AIA in a Korean population.
Aspirin-intolerant asthma (AIA), which was first described in 1922, is a unique clinical syndrome associated with acute bronchconstriction upon administration of aspirin and other non-steroidal anti-inflammatory drugs . Although considered as one of the most widely used medication, aspirin intake also incurs various side effects including manifested gastrointestinal ulcer, stomach bleeding and tinnitus especially in higher doses. Although the side effects caused by aspirin are not common, these effects have been reported in about 10% of adult asthmatics.
The triad of AIA symptoms includes aspirin sensitivity, bronchial asthma and chronic rhinosinusitis with nasal polyposis [2–4]. Nasal polyposis is a chronic inflammatory disease of the upper respiratory tract that affects around two thirds of patients with AIA. The polyps are filled with mast cells and eosinophils due to high levels of the proinflammatory cysteinyl leukotrienes (cysLTs) . After mast cells are activated, it releases a variety of paracrine signals that target tissues such as bronchi and vasculature to recruit other immune cells at the inflammatory site. Among the remarkable signaling molecules released by mast cells, the cysLTs that includes leukotriene C(4) (LTC4), LTD4, and LTE4 are well known [6, 7]. The LTC4 is secreted from mast cells following Ca(2+) influx through store-operated calcium release-activated calcium (CRAC) channels [7–10]. It has also been reported that proteinase activated receptor-2 (PAR2), as a novel emerging pharmacological target in airway diseases, is expressed in the airway epithelium and its activation may be involved in the protective role of preserving bronchial functionality [11, 12]. In line with the fact that the airway smooth muscle cell contraction is regulated by changes in intracellular Ca(2+) concentration, a previous molecular report has revealed a relationship between this Ca(2+) regulation and bronchodilation in the airway . More recently, novel actions of NSAIDs on vascular ion channels including L-type calcium channel has also been suggested .
The L-type calcium channels are composed of five subunits. The CACNG6 gene encodes one of these subunits, specifically a gamma subunit protein which was first identified in muscle cells . Recent studies have revealed negative relations of CACNG6 gene expression to chronic obstructive pulmonary disease, responses of the human airway epithelium following injury and % parenchyma in lung tissues [16, 17]. The CACNG6 is an integral membrane protein that stabilizes the calcium channel during its inactive state . Since the role of azelastine in asthma treatment is achieved by blocking the L-type calcium channel thus, preventing Ca(2+) current , the CACNG6 may, therefore, be of interest in the study of asthma treatment. Moreover, abnormal Ca(2+) influx may induce leukotriene overproduction from mast cells, leading to recruitment of other immune cells, such as eosinophils, resulting in vasospasm by eosinophilic infiltration of the coronary artery wall and cardiac contractility [8, 20]. Although many signaling pathways have been known to underlie the reversible contraction of airway smooth muscle, ionic mechanisms related to Ca(2+) and the calcium channels in the airways are still poorly understood . In this connection, we explored whether CACNG6 single nucleotide polymorphisms (SNPs) are associated with AIA.
Subjects in this study were recruited from the Asthma Genome Research Center comprising hospitals of Soonchunhyang, Chunnam, Chungbuk, Seoul National and Chung-Ang Universities in Korea. All subjects provided written informed consents and the study protocols were approved by the Institutional Review Board of each hospital. Diagnosis of AIA was performed according to a modified method as previously described . We also performed aspirin challenge in subjects with a history of aspirin hypersensitivity, presence of urticaria, nasal polyps and sinusitis. The AIA case group included patients with 20% or greater decreases in FEV1 or 15% to 19% decreases in FEV1 with naso-ocular or cutaneous reactions, whereas subjects showing a rate of FEV1 decline less than 15% without extrabronchial, nasal or skin symptoms were included in ATA group.
SNP selection and genotyping
We selected 8 common polymorphic SNPs from the International HapMap Project phase 1&2 http://hapmap.ncbi.nlm.nih.gov/ and National Center for Biotechnology Information (build 36) based on the minor allele frequency (> 0.05) and LD status. Among three SNPs (rs3810244, rs158194, rs4806481) in LD (|D'| > 0.7), the most common SNP (rs4806481) was selected for genotyping. For examination of AIA risk association, we genotyped 8 common SNPs in the CACNG6 gene. Genotyping was carried out with 20 ng of genomic DNA by TaqMan assay in the ABI prism 7900HT sequence detection system software version 2.3 (Applied Biosystems, CA, USA) in 102 AIA cases and 429 ATA controls with the assessment of data quality by duplicate DNAs (n = 10). A total of 8 polymorphisms on CACNG6 were successfully genotyped.
We calculated linkage disequilibrium to all pairs of biallelic loci using Lewontin's D' (|D'|)  and r 2 . PHASE algorithm (ver. 2.0) developed by Stephens et al. was used for inferring haplotypes . Associations of genotypes and haplotypes in the CACNG6 gene with AIA were calculated using logistic analyses adjusted for age, gender, smoking status, atopy and body mass index as covariates. We also performed linear regression analysis to determine the differences in the rates of decline in FEV1 following aspirin challenge among the genotypes and haplotypes. The data were adjusted, managed and analyzed using SAS version 9.1 (SAS Inc., Cary, NC). The effective number of independent marker loci (7.28) was calculated for multiple testing corrections using SNPSpD software http://genepi.qimr.edu.au/general/daleN/SNPSpD/, which is based on the spectral decomposition (SpD) of matrices of pair-wise LD between SNPs.
In this study, the clinical characteristics of the study subjects showed that the fall rate by aspirin provocation in AIA patients was significantly higher than that of ATA controls (33.59 ± 13.42% vs. 3.54 ± 4.85%, respectively; P < 0.0001). This was in contrast to the current smoker ratio and mean age which was higher in ATA controls than those of AIA patients (21.36% vs. 30.07% for smoking status and 42.76 year vs. 47.30 year for mean age, respectively). Body mass index (BMI) and PC20 methacholine test also showed significant signals (P < 0.01). In addition, AIA patients were more sensitive to methacholine than ATA patients (4.26 mg/ml vs. 6.91 mg/ml). Analyses on other factors in subject's clinical characteristics showed no significant differences between AIA and ATA groups. The clinical characteristics of the study subjects are summarized in Table 1.
To investigate the association of CACNG6 polymorphisms with AIA, 8 SNPs (rs251850, rs4806481, rs158196, rs158199, rs192808, rs450227, rs2291068, rs459247) in the CACNG6 gene were genotyped in a total of 531 study subjects including 102 AIA patients as a case group and 429 ATA patients as controls. The genotype distributions of all loci were in Hardy-Weinberg equilibrium (Table 2, P > 0.05). Genetic map and location of CACNG6 polymorphisms are shown in Fig. 1A. Logistic analysis was used to analyze whether the genetic polymorphisms were associated with AIA. Interestingly, analysis revealed that a SNP in intron (rs192808C > T; OR = 2.88, 95% CI = 1.60-5.17, P = 0.0004, P corr = 0.0029 in co-dominant model), which was more frequent in AIA patients than in ATA controls (0.103 in AIA patients and 0.045 in ATA patients) (Table 2), was significantly associated with the risk of AIA even after multiple testing corrections. In additional analysis using effective models, this allelic variant also showed a susceptibility to AIA in dominant model (OR = 2.99, 95% CI = 1.62-5.54, P = 0.0005, P corr = 0.0036).
Based on the 8 polymorphisms, haplotypes were calculated using PHASE software resulting in two haplotype blocks (Fig. 1B and 1C). Although a different pattern in Block 1 between AIA and ATA was observed (Fig. 1D), the haplotypes which were composed of five SNPs were used for the association analysis because they were estimated as common haplotypes derived from a large number of subjects in the Korean population. Among the haplotypes, CACNG6_BL1_ht6, the only one containing the rare T variant of rs192808, also showed significant association with risk of AIA (P = 0.003, P corr = 0.02 in co-dominant model; P = 0.001, P corr = 0.0087 in dominant model), showing a similar pattern with the association of rs192808 SNP (Table 2). In the case of CACNG6_BL1_ht6 haplotype, the frequency of AIA patients was higher at about two-fold than that of ATA controls (0.093 and 0.045, respectively).
Next, we performed regression analysis for the association between decline of FEV1 by aspirin provocation and CACNG6 polymorphisms. As summarized in Table 3, among all the variants and haplotypes, SNP rs192808 (P = 0.006 in co-dominant model and P = 0.01 in dominant model) and haplotype CACNG6_BL1_ht6 (P = 0.03 in co-dominant model and P = 0.02 in dominant model) showed the most significant signal. In addition, in the second LD block, haplotype CACNG6_BL2_ht2 showed an association with the decline of FEV1 by aspirin provocation in the dominant model (P = 0.03). However, in further regression analysis using only AIA cases, no significant associations were detected (Additional file 1, Table S1), indicating that rs192808 and haplotypes of CACNG6 could not directly affect the aspirin-induced decline of FEV1 in AIA patients.
Although over-production of pro-inflammatory cysLTs such as LTC4, LTD4 and LTE4 has been considered as a main cause of aspirin hypersensitivity in asthma , recent studies have suggested that other genes may be related to AIA [21, 26, 27]. On the other hand, previous studies have reported that concentration of calcium ion is related with leukotriene secretion  and that CACNG6 gene is negatively expressed in chronic obstructive pulmonary disease and human airway epithelium following injury [16, 17]. Considering these facts, we hypothesized that the modulation of calcium concentration could play an important role in abnormal signaling pathways in the airways and that the CACNG6 gene, as a subunit of L-type calcium channels, and its polymorphisms might be associated with risk of AIA.
Although the minor T allele of rs192808 and its unique haplotype (CACNG6_BL1_ht6) showed significant association signals with decline of FEV1 (Table 3), allelic dose effect revealed no consistent results of decline of FEV1 between rs192808 and CACNG6_BL1_ht6 due to the small number of rare alleles (R/R), therefore further replication studies are needed for a correct association. Among polymorphisms in the CACNG6 gene, the rs192808 polymorphism in intronic region showed a highly significant signal. It has also been found that CACNG6 has three transcripts. Thus, to predict role of rs192808, we performed GeneSplicer http://www.cbcb.umd.edu/software/GeneSplicer and EMBL-EBI splice site prediction tool http://www.ebi.ac.uk/asd-srv/wb.cgi?method=2 to know whether rs192808 could be located in splicing association site . However, results showed that the rs192808 was not located in any splicing-related site such as donor site (5' boundary), acceptor site (3' boundary) and branch point. In addition, the functionality of other SNPs that were in LD with rs192808 was analyzed. However, results from the Signal Scan program http://www-bimas.cit.nih.gov/molbio/signal/ revealed that CACNG6 rs251850 in promoter region was not a transcriptional element, and three intronic SNPs (rs4806481, rs158196, rs158199) were not predicted as splicing-related sites.
A previous study has reported that some SNPs located deep in intronic region can create new transcription factor binding site . Thus, we further performed TFSEARCH http://www.cbrc.jp/research/db/TFSEARCH.html using bioinformatical software to predict whether rs192808 can create transcription binding site. However, results showed that the location of rs192808 is not in the transcription factor binding site. Even if these results suggest that rs192808 may not affect the function of CACNG6, previous studies reported that sometimes allelic variants in intron can lead to the onset of human diseases due to alterations in the expression level of mRNA caused by creating potential aberrant splice sites [31, 32]. Moreover, additional transcriptional isoforms of the CACNG6 gene have been discovered from the Mammalian Gene Collection (MGC) Program  as shown in the Ensembl Genome Browser http://www.ensembl.org/index.html (Additional files 3, Figure S1). Therefore, findings from our study on the significant association between rs192808 and AIA needs to be replicated and/or further analyzed in order to understand its detailed function in the mechanism of AIA.
Since there is a possibility that CACNG6 SNPs are in LD with functional SNP(s) that is/are located in a different gene in the nearby region, we further analyzed the LD near CACNG6 in Asian populations (Japanese and Chinese) from the International HapMap Project. However, the CACNG6 gene showed no LD with other nearby genes (Additional files 4, Figure S2). On the other hand, although minor allele frequencies of 8 SNPs validated in Korean asthmatics were similar to those of Asian populations (Chinese and Japanese), significant differences were detected from other populations especially in rs158196, rs1581199, rs192808, rs450227, rs2291068, and rs459247 (Additional files 2, Table S2). When comparing LDs on 8 SNPs of CACNG6 among Korean asthmatic patients and other populations (Additional file 5, Figure S3), albeit non-asthmatic Korean population has not determined, it can be assumed that a different LD status of the asthmatics may affect AIA and/or asthma-related phenotypes at least in a Korean population. Moreover, although replications and functional studies are needed, rs192808 and CACNG6_BL1_ht6 could be genetic markers of AIA susceptibility.
Although replication for the associations is required in an independent study cohort to validate our findings, this study showed that the genetic polymorphisms of CACNG6 might be associated with risk of AIA at least in a Korean population, providing a new link between voltage-dependent calcium channel and aspirin hypersensitivity in asthmatics. Further functional and replication studies elsewhere are needed to identify the roles of the polymorphisms of the gene.
calcium channel: voltage-dependent: gamma subunit 6
single nucleotide polymorphism
minor allele frequency
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The pre-publication history for this paper can be accessed here:http://0-www.biomedcentral.com.brum.beds.ac.uk/1471-2350/11/138/prepub
This work was supported by a grant from the Korea Health 21 R&D Project (A010249); a grant number M1-0302-00-0073 from Korea Science and Engineering Foundation (KOSEF) funded by the Korea government (MEST) (No. 2009-0080157); an Intramural Research Grant of the Korea National Institute of Health (grant number 4800-4845-300-260-00); and a Priority Research Centers Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education, Science and Technology (2009-0093822). The DNA samples were generously provided by the Soonchunhyang University, Bucheon Hospital Biobank, a member of the National Biobank of Korea, supported by the Ministry of Health, Welfare and Family Affairs, Republic of Korea.
The authors declare that they have no competing interests.
JSL developed tables/figures, and drafted the manuscript. JK, JSB and CFP helped to interpret the data and to draft the manuscript. SU, JP, AJ, MK, ISC and CP recruited subjects. TJP and JYK, participated in preparation and quality control of samples, and data collection. BP and HSC performed the statistical analysis. CP and HDS coordinated all of this study and helped to draft the manuscript. All authors read and approved the final manuscript.
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Additional file 4: LD plot nearby CACNG6. LD blocks nearby CACNG6 based on Asian populations (Japanese and Chinese) show no LD between CACNG6 and near genes. (A) LD blocks of near genes and CACNG6. Data for LD map is obtained from the International HapMap project. (B) LD block of the CACNG6 gene. (TIFF 332 KB)
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Lee, J.S., Kim, J., Bae, J.S. et al. Association of CACNG6 polymorphisms with aspirin-intolerance asthmatics in a Korean population. BMC Med Genet 11, 138 (2010) doi:10.1186/1471-2350-11-138
- Chronic Obstructive Pulmonary Disease
- Airway Smooth Muscle
- Korean Population
- Nasal Polyposis