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Table 7 Large CNVs in the Croatia dataset: CNVs longer than 500 Kb in Croatia Cases.

From: Population-based study of genetic variation in individuals with autism spectrum disorders from Croatia

Chromosomal Region (Cytogenetic Coordinate)

Copy No.

Length (Kb)

No. SNPs

Start SNP

End SNP

Genes

Individual

Sex

Age

chr1:144943150-145824905 (1q21.1)

3

882

207

rs6656361

rs11240147

ACP6, BCL9, CHD1L, FMO5, GJA5, PRKAB2

AC0037

m

31

chr2:129716352-130250751 (2q21.1)

1

534

114

rs1251175

rs7578253

HS6ST1 (923711 bp upstream); RAB6C (202954 bp downstream)

AC0068

m

9

chr2:199943597-201740672 (2q33.1)

1

1,797

324

rs13028839

rs10200857

AOX1, BZW1, C2orf47, C2orf60, CFLAR, CLK1, FAM126B, FLJ38973, KCTD18, LOC26010, NDUFB3, NIF3L1, ORC2L, PPIL3, SATB2, SGOL2

AC0086

m

11

chr4:189924391-191164126 (4q35.2)

1

1,240

174

rs4863387

rs13120250

FRG1, TUBB4Q

AC0025

m

22

chr7:124752465-125591197 (7q31.33)

1

839

132

rs7810309

rs510319

POT1 (395192 bp upstream); GRM8 (274696 bp downstream)

AC0058

f

35

chr7:78246495-97499079 (7q21.11-21.3)

3

18,681

3381

rs13308578

rs6960808

ABCB1, ABCB4, ADAM22, C7orf23, CACNA2D1, CD36, CROT, DBF4, DMTF1, GNAI1, GNAT3, GRM3, HGF, KIAA1324L, MAGI2, MGC26647, PCLO, RUNDC3B, SEMA3A, SEMA3C, SEMA3D, SEMA3E, SLC25A40, SRI, STEAP4, ZNF804BCLDN12, FLJ21062, GTPBP10, PFTK1, STEAP1, STEAP2, ZNF804BACN9, AKAP9, ANKIB1, ASB4, ASNS, BET1

AC0015

m

20

chr10:41756307-42461241 (10q11.1-11.21)

3

705

49

rs10909011

rs158389

ZNF33B

AC0061

m

17

chr10:54450683-58765948 (10q21.1)

1

4,315

951

rs2249349

rs2928464

PCDH15, ZWINT

AC0045

m

33

chr11:124367724-134445626 (11q24.2-q25)

1

10,078

2842

rs6590113

rs11224228

ACAD8, ACRV1, ADAMTS15, ADAMTS8, APLP2, B3GAT1, BARX2, C11orf38, C11orf45, CCDC15, CDON, CHEK1, DCPS, DDX25, EI24, ETS1, FAM118B, FEZ1, FLI1, FOXRED1, GLB1L3, HNT, HYLS1, IGSF9B, JAM3, KCNJ1, KCNJ5, KIRREL3, LOC219854, LOC89944, NCAPD3, NFRKB, OPCML, P53AIP1, PATE, PKNOX2, PRDM10, PUS3, RICS

AC0052

f

26

chr12:37835456-42584684 (12q12)

3

4,538

976

rs11170890

rs4488262

ABCD2, C12orf40, KIF21A, LRRK2, SLC2A13CNTN1ADAMTS20, GLT8D3, IRAK4, PDZRN4, PPHLN1, PRICKLE1, PUS7L, TMEM117, TWF1, YAF2, ZCRB1

AC0093

m

17

chr16:15032942-16197033 (16p13.11)

3

1,164

201

rs4985124

rs8056397

ABCC1, ABCC6, C16orf45, C16orf63, KIAA0430, MPV17L, MYH11, NDE1, NTAN1, PDXDC1, RRN3

AC0003

m

31

chr16:21482719-29234430 (16p12.2-11.2)

3

7,175

1266

rs13339281

rs7500911

C16orf65, CDR2, CHP2, COG7, DCTN5, EARS2, EEF2K, ERN2, GGA2, HS3ST2, IGSF6, LOC23117, METTL9, NDUFAB1, OTOA, PALB2, PLK1, POLR3E, PRKCB1, SCNN1B, SCNN1G, UBFD1, UQCRC2, USP31, VWA3ACACNG3, PRKCB1, RBBP6AQP8, ARHGAP17, LCMT1, SLC5A11, ZKSCAN2HS3ST4APOB48R, ATP2A1, ATXN2L, C16orf82, CCDC101

AC0088

m

15

chr17:28980655-29960126 (17q12)

3

979

350

rs11657037

rs11657603

ACCN1, CCL1, CCL11, CCL13, CCL2, CCL7, CCL8, FLJ44815, TMEM132E

AC0100

m

13

chr22:48833840-49524956 (22q13.33)

1

691

126

rs137916

rs2285395

ACR, ADM2, ARSA, CHKB, CPT1B, ECGF1, FAM116B, HDAC10, KLHDC7B, LOC164714, LOC440836, MAPK11, MAPK12, MAPK8IP2, MIOX, MLC1, MOV10L1, NCAPH2, PANX2, PLXNB2, SAPS2, SBF1, SCO2, SELO, SHANK3, TMEM112B, TRABD, TUBGCP6

AC0058

f

35