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Table 5 LXR genotypes in the Swedish population based SDPP cohort

From: Functional and genetic analysis in type 2 diabetes of Liver X receptor alleles – a cohort study

SNP

Allelea

#11b

#12

#22

%11

%12

%22

%1c

%2

call rate %

HWE

P valued

LXRA

rs4752822

T>C

570

605

157

43

45

12

66

34

99

0.91

rs61896015

C>A

886

377

47

68

29

4

82

18

97

0.42

rs12221497

G>A

902

370

47

68

28

4

82

18

98

0.27

rs2279239

T>C

559

590

151

43

45

12

66

34

97

0.86

rs2279238

C>T

923

360

35

70

27

3

84

16

98

1.00

LXRB

rs35463555

G>A

612

576

140

46

43

11

68

32

99

0.86

rs17373080

C>G

613

578

137

46

43

11

68

32

99

1.00

rs2248949

C>T

426

607

267

33

47

20

56

44

97

0.07

  1. a) Common allele is written first. b) #11 = number of subjects homozygous for common allele, #12 = number of heterozygous subjects, #22 = number of subjects homozygous for rare allele. c) Major allele frequency. d) HWE P values were calculated in HAPLOVIEW [32].