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Table 6 Test for trend in risk of scarring trachoma or trichiasis with copy number for each haplotype.

From: Innate immunity in ocular Chlamydia trachomatis infection: contribution of IL8 and CSF2 gene variants to risk of trachomatous scarring in Gambians

HAP SNPa CLR test for trend
          Scarring trachoma Trichiasis
  1A 2A 3A 4A 5A 6A 7A 8A OR 95%CI p value OR 95%CI p value
H1 T C C G T C G C 1.300 1.002,1.670 0.048 1.322 0.980,1.790 0.071
H2 - - - - T C G - 1.086 0.854,1.380 0.502 1.242 0.935,1.645 0.135
L1 T C C G A T A C 0.839 0.555,1.267 0.403 0.656 0.405,1.060 0.087
L2 - - - - A T A - 0.755 0.567,1.005 0.065 0.617 0.438,0.870 0.006
  1. OR >1 indicates an increase in risk with copy number and OR <1 a decrease.
  2. aRefer to table 4 for SNP information